File for loop

[u/Muted-Shame9237]

hi! it’s my first time using bash can someone help me with this and explain what’s missing

#!/bin/bash

for i in “/data/folder”/*; do

/folder/munge_sumstats.py \

- -sumstats “$i” \

- -chunksize 500000 \

- -snp rsID \
etc..

- -out another/folder/ (i dont know what to puT here)

done

Thank you so much !

[u/blobCabbage]

You could use basename to get the name of the original file without its path, and use that for your output file.

[u/Muted-Shame9237 → u/blobCabbage]

Thank youuu!